A Simple and Effective Method for Nucleic Acid and Pcr Product Purification: Magnetic Bead Technology
DOI:
https://doi.org/10.24925/turjaf.v13i9.2667-2670.7770Keywords:
Magnetic Bead Technology, Sanger sequencing, Nucleic acid PurificationAbstract
Alternative methods for nucleic acid purification have been developed in recent years. Alcohol precipitation, a low-cost alternative method for nucleic acid purification, requires a high degree of technical professionalism to ensure consistently good quality data. Proprietary kits utilizing the affinity chromatography methods give very good results but are quite costly. As an alternative to these methods, magnetic bead technology has become widely used for nucleic acid purification. There has been a significant increase in the use of magnetic beads due to their rapid, inexpensive, and easy applicability. Separation by magnetic beads is rapid and has minimal potential for user error. In this article, PCR products were purified by the magnetic bead method and sequenced by Sanger sequencing. The sequence data obtained were compared with sequence data obtained from the BigDye Terminator enzymatic purification method, and the advantages of using magnetic beads were evaluated.
References
Akutsu, J-I., Tojo, Y., Okochi, M., Yohda, M., Segawa, O., Obata, K., Tajima, H., (2004). Development of an integrated automation system with a magnetic bead-mediated nucleic acid purification device for genetic analysis and gene manipulation. Biotechnol Bioeng 86:667–671. doi: 10.1002/bit.20049.
Berdimuratova, K., Amirgazin, A., Kuibagarov М., Lutsay, V., Mukanov, K., & Shevtsov, A. (2020). Optimization of PCR Purification Using Silica-Coated Magnetic Beads. Eurasian Journal of Applied Biotechnology, (1). doi.org/10.11134/btp.1.2020.8.
Berensmeir, S., (2006). Magnetic particles for the separation and purification of nucleic acids. Appl Microbiol Biotechnol 73:495–504. doi: 10.1007/s00253-006-0675-0.
Benz, B., Lopez-Echartea, E., Whitaker, B., Baldwin, T., Geddes, B. (2024). Improved efficiency of two-step amplicon pcr using an acoustic liquid handler.. https://doi.org/10.1101/2024.12.06.627172.
Elkin, C. J., Kapur, H., Smith, T. et al. (2002). Magnetic bead purifi-cation of Labeled DNA fragments for high-throughput capillary electrophoresis sequencing. BioTechniques, vol.32, no.6, pp. 1296–1300. doi: 10.2144/02326st05.
Greenwald WW et al. Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression. Nat Commun. 2019 Mar 5;10(1):1054. doi: 10.1038/s41467-019-08940-5.
Margulies, M., Egholm, M., Altman, W. E. et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature, vol. 437, no. 7057, pp. 376–380. doi.org/10.1038/nature03959.
Mijatovic-Rustempasic, S., Frace, M. A., Bowen, M. D. (2012). Cost‐Effective Paramagnetic Bead Technique for Purification of Cycle Sequencing Products. Sequencing, (1), 767959. doi: 10.1155/2012/767959.
Oberacker P, Stepper P, Bond DM, Ho¨hn S, Focken J, Meyer V, et al. (2019). Bio-OnMagnetic-Beads (BOMB): Open platform for highthroughput nucleic acid extraction and manipulation. PLoS Biol 17(1): e3000107. doi.org/10.1371/journal.pbio.3000107.
Pichl, L., Heitmann, A., Herzog, P., Oster, J., Smets, H., Schottstedt, V. (2005). Magnetic bead technology in viral RNA and DNA extraction from plasma minipools. Transfusion 45:1106–1110. doi: 10.1111/j.1537-2995.2005.04356.x.
Rusk, N. (2011). Torrents of sequence. Nature Methods, vol.8, no.1, p. 44. doi:10.1038/Nmeth.F.330, DOI:10.1038.
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