DNA Barcoding and Phylogenetic Analysis of Culex and Anopheles Species in Siirt, Türkiye
Keywords:
COI gene, Culicidae, Molecular identification, DNA barcoding, Species identificationAbstract
Mosquitoes play a critical role as disease vectors, making them significant in terms of both public health concerns and ecological balance. This study aims to identify mosquito specimens collected from Siirt city center and six different districts using morphological and molecular methods. A 658 bp fragment of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene region was used for molecular diagnosis. The findings revealed four mosquito species: Culex theileri Theobald, 1903, Culex mimeticus Noè, 1899, Culex quinquefasciatus Say, 1823, and Anopheles superpictus Grassi, 1899. Mitochondrial gene PCR products were sequenced, and the sequences were uploaded to the NCBI database for public access. Phylogenetic analysis was conducted using these sequences to investigate the genetic distances and evolutionary relationships among the mosquito species. In the phylogenetic analysis, Chironomus kiiensis was used as an outgroup. The analysis revealed that C. quinquefasciatus and A. superpictus were had the highest genetic distance (0.16), while the closest genetic distance was observed between C. quinquefasciatus and C. theileri (0.06). This study is presented as a preliminary investigation into the genetic diversity, evolutionary relationships, and population dynamics of mosquito species in Siirt Province. Further studies with a larger sample size and additional sequences are needed to establish more comprehensive phylogenetic relationships. The molecular findings contribute significantly to the systematic and ecological studies of mosquitoes.
References
Adeniran, A. A., Hernández-Triana, L. M., Ortega-Morales, A. I., Garza-Hernández, J. A., de la Cruz-Ramos, J., Chan-Chable, R. J., Vázquez-Marroquín, R., Huerta-Jiménez, H., Nikolova, N. I., & Fooks, A. R. (2021). Identification of mosquitoes (Diptera: Culicidae) from Mexico State, Mexico using morphology and COI DNA barcoding. Acta tropica, 213, 105730.
Aldemir, A., & Boşgelmez, A. (2006). Population dynamics of adults and immature stages of mosquitoes (Diptera: Culicidae) in Gölbaşı District, Ankara. Turkish Journal of Zoology, 30(1), 9-17.
Alten, B., Bellini, R., Caglar, S. S., Simsek, F. M., & Kaynas, S. (2000). Species composition and seasonal dynamics of mosquitoes in the Belek region of Turkey. Journal of Vector Ecology, 25(2).
Aung, S. T., Bawm, S., Chel, H. M., Thu, M. J., Wai, S. S., Eshita, Y., Nakao, R., Katakura, K., & Htun, L. L. (2023). Molecular Identification of Aedes, Armigeres, and Culex Mosquitoes (Diptera: Culicidae) Using Mitochondrial Cytochrome Oxidase Subunit I Genes in Myanmar. Acta Parasitologica. https://doi.org/10.1007/s11686-023-00721-x
Aytekin, S., Aytekin, A. M., & Alten, B. (2009). Effect of different larval rearing temperatures on the productivity (Ro) and morphology of the malaria vector Anopheles superpictus Grassi (Diptera: Culicidae) using geometric morphometrics. Journal of Vector Ecology, 34(1), 32-42. https://doi.org/10.1111/j.1948-7134.2009.00005.x
Azari-Hamidian, S., & Harbach, R. E. (2009). Keys to the adult females and fourth-instar larvae of the mosquitoes of Iran (Diptera: Culicidae). Zootaxa, 2078(1), 1-33.
Azari-Hamidian, S., & Omrani, S.-M. (2022). Morphological Aberrations of the Dirofilariasis, Sindbis Fever and West Nile Fever Vector Culex Theileri (Diptera: Culicidae) in Iran. Journal of Arthropod-Borne Diseases, 16(3), 206.
Batovska, J., Blacket, M. J., Brown, K., & Lynch, S. E. (2016). Molecular identification of mosquitoes (Diptera: Culicidae) in southeastern Australia. Ecology and Evolution, 6(9), 3001-3011. https://doi.org/10.1002/ece3.2095
Becker, N., Petric, D., Zgomba, M., Boase, C., Madon, M., Dahl, C., & Kaiser, A. (2010). Mosquitoes and their control. Springer Science & Business Media.
Benelli, G., Pavela, R., Iannarelli, R., Petrelli, R., Cappellacci, L., Cianfaglione, K., Afshar, F. H., Nicoletti, M., Canale, A., & Maggi, F. (2017). Synergized mixtures of Apiaceae essential oils and related plant-borne compounds: Larvicidal effectiveness on the filariasis vector Culex quinquefasciatus Say. Industrial Crops and Products, 96, 186-195.
Bişkin, Z., İnci, A., Yıldırım, A., & Düzlü, Ö. (2010). Kayseri’nin Felahiye yöresinde yayginlik gösteren sivrisinek (Diptera: Culicidae) türleri. Sağlık Bilimleri Dergisi, 19(2), 133-139.
Chaiphongpachara, T., Changbunjong, T., Laojun, S., Nutepsu, T., Suwandittakul, N., Kuntawong, K., Sumruayphol, S., & Ruangsittichai, J. (2022). Mitochondrial DNA barcoding of mosquito species (Diptera: Culicidae) in Thailand. PLoS One, 17(9), e0275090.
Cranston, P. S., Ramsdale, C. D., Snow, K. R., & White, G. B. (1987). Keys to the adults, male hypopygia, fourth-instar larvae and pupae of the British mosquitoes (Culicidae) with notes on their ecology and medical importance (No. 48, p. 152pp).
Çetin, H., & Yanıkoğlu, A. (2004). Antalya kentinde bulunan Sivrisinek (Diptera: Culicidae) türleri, üreme alanları ve baskın tür Culex pipiens L.’in bazı özellikleri. Turkish Journal of Entomology, 28(4), 283-294.
Daravath, S. S., Siddaiah, M., & ReddyaNaik, B. (2015). Molecular characterization and phylogenetic analysis of Culex quinquefasciatus by DNA barcoding. Advances in Entomology, 3(03), 118.
Darsie, R. F., & Samanidou-Voyadjoglou, A. (1997). Keys for the identification of the mosquitoes of Greece. Journal of the American Mosquito Control Association-Mosquito News, 13(3), 247-254.
Demirci, B. (2006). Iğdır ve civarındaki sivrisinek (Diptera: Culicidae) türlerinin biyo-ekolojileri üzerine araştırmalar, MSc thesis, Kafkas Üniversitesi, Kars, 56 pp.
Demirci, B., Lee, Y., Lanzaro, G. C., & Alten, B. (2012). Altitudinal genetic and morphometric variation among populations of Culex theileri Theobald (Diptera: Culicidae) from northeastern Turkey. Journal of Vector Ecology, 37(1), 197-209. https://doi.org/10.1111/j.1948-7134.2012.00217.x
DuBose, W. P., & Curtin, T. J. (1965). Identification keys to the adult and larval mosquitoes of the Mediterranean area. Journal of medical entomology, 1(4), 349-355.
Ede, A., & Öztemiz, S. (2021). İstanbul’da Sivrisinek Türleri ile İnvaziv Aedes Türlerinin Tespiti ve Bulunma Oranları. Düzce Üniversitesi Bilim ve Teknoloji Dergisi, 9(3), 321-327.
Eisen, L., Bolling, B. G., Blair, C. D., Beaty, B. J., & Moore, C. G. (2008). Mosquito species richness, composition, and abundance along habitat-climate-elevation gradients in the northern Colorado Front Range. Journal of medical entomology, 45(4), 800-811.
Eren, H., Yağcı, Ş., & Tanyüksel, M. (1996). Ankara yöresinde bulunan sivrisinek (Diptera: Culicidae) türleri. Türk Hij Den Biyol Derg, 53(1), 25-29.
Folmer Ole., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology. 3:294–299.
Foster, W. A., & Walker, E. D. (2019). mosquitoes (Culicidae). In Medical and veterinary entomology (pp. 261-325). Academic press, Elsevier.
Günay, F. (2015). Türkiye sivrisinek faunası Üzerine DNA barkodlama yöntemiyle moleküler analizler, PhD Thesis, Hacettepe Üniversitesi, Fen Bilimleri Enstitüsü, Ankara, 138 pp.
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In Nucleic acids symposium series (Vol. 41, No. 41, pp. 95-98).
Hanafi-Bojd, A. A., Sedaghat, M. M., Vatandoost, H., Azari-Hamidian, S., & Pakdad, K. (2018). Predicting environmentally suitable areas for Anopheles superpictus Grassi (s.l.), Anopheles maculipennis Meigen (s.l.) and Anopheles sacharovi Favre (Diptera: Culicidae) in Iran. Parasites & Vectors, 11(1), 382. https://doi.org/10.1186/s13071-018-2973-7
Harbach, R. E. (1988). The mosquitoes of the subgenus Culex in southwestern Asia and Egypt (Diptera: Culicidae). https://www.cabidigitallibrary.org/doi/full/10.5555/19890595423
Harbach, R. E. (2007). The Culicidae (Diptera): A review of taxonomy, classification and phylogeny. Zootaxa, 1668(1), 591-638.
Harbach, R. E. (2018). Culicipedia: Species-group, genus-group and family-group names in Culicidae (Diptera). Cabi. United Kingdom, 396 pp.
Hasan Muslu, Ö. K., & Özbilgin, A. (2011). Manisa İl ve İlçelerinde Saptanan Sivrisinek Türlerinin (Diptera: Culicidae) Yaşam Alanları ve Mevsimsel Değişikliklere Göre Değerlendirilmesi. Turkiye Parazitoloji Dergisi, 35, 100-104.
Hebert, P. D. N., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society of London. Series B: Biological Sciences, 270(1512), 313-321. https://doi.org/10.1098/rspb.2002.2218
Hebert, P.D.N., Ratnasingham, S., Zakharov, EV, Telfer, AC, Levesque-Beaudin, V., Milton, MA, Pedersen, S., Jannetta, P. ve deWaard, JR (2016). Hayvan türlerinin DNA barkodlarıyla sayılması: Kanada böcekleri. Kraliyet Topluluğu B'nin Felsefi İşlemleri: Biyolojik Bilimler, 371, 20150333.
Hernández-Triana, L. M., Brugman, V. A., Nikolova, N. I., Ruiz-Arrondo, I., Barrero, E., Thorne, L., de Marco, M. F., Krüger, A., Lumley, S., & Johnson, N. (2019). DNA barcoding of British mosquitoes (Diptera, Culicidae) to support species identification, discovery of cryptic genetic diversity and monitoring invasive species. ZooKeys, 832, 57.
Kuçlu, Ö., & Dik, B. (2018). Mosquito (Diptera: Culicidae) fauna of Western Black Sea Region of Turkey. Türkiye Parazitolojii Dergisi, 42(2), 138.
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular biology and evolution, 35(6), 1547-1549.
Matvienko, M. (2015). CLC Genomics Workbench. In Plant and Animal Genome. Sr. Field Application Scientist; CLC Bio: Aarhus, Denmark
Noè, G. (1899) Contribuzione allo studio dei Culicidi. Bollettino della Società Entomologica Italiana, 31, 235‒262.
Oter, K., Gunay, F., Tuzer, E., Linton, Y.-M., Bellini, R., & Alten, B. (2013). First Record of Stegomyia albopicta in Turkey Determined By Active Ovitrap Surveillance and DNA Barcoding. Vector-Borne and Zoonotic Diseases, 13(10), 753-761. https://doi.org/10.1089/vbz.2012.1093
Özgökçe, M. S., Karaca, İ., Atlihan, R., Kasap, İ., Özgökçe, F., Yıldız, P., Polat, E., & Şengör, M. (2007). Van Gölü Sahil Şeridinde Sucul ve Karasal Böcek Faunası ve Bitkisel Floranın Saptanması, Farklı Bölgelerde Göl Kirliliğinin İndikatör Türler Yardımıyla Belirlenmesi. Tubitak Kesin Rapor, YDABG, 102Y089.
Roe, A. D., & Sperling, F. A. (2007). Patterns of evolution of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding. Molecular Phylogenetics and evolution, 44(1), 325-345.
Samy, A. M., Elaagip, A. H., Kenawy, M. A., Ayres, C. F., Peterson, A. T., & Soliman, D. E. (2016). Climate change influences on the global potential distribution of the mosquito Culex quinquefasciatus, vector of West Nile virus and lymphatic filariasis. PloS one, 11(10), e0163863.
Sengil, A. Z., Akkaya, H., Gonenc, M., & Gonenc, D. (2011). Species composition and monthly distribution of mosquito (Culicidae) larvae in the Istanbul metropolitan area, Turkey. Int J Biol Med Res, 2(1), 415-424.
Smith, D. R., Aguilar, P. V., Coffey, L. L., Gromowski, G. D., Wang, E., & Weaver, S. C. (2006). Venezuelan equine encephalitis virus transmission and effect on pathogenesis. Emerging infectious diseases, 12(8), 1190.
Somboon, P., Phanitchakun, T., Namgay, R., & Harbach, R. E. (2023). Review of the Mimeticus Subgroup of Culex (Culex)(Diptera: Culicidae), With an Assessment of the Specific Status of Three Nominal Species Described From India. Journal of Medical Entomology, 60(2), 255-271.
Somboon, P., Phanitchakun, T., Saingamsook, J., Yoshihide, M., Namgay, R., & Harbach, R. E. (2021). Culex bhutanensis, a new species of the Mimeticus Subgroup of the nominotypical subgenus of the genus Culex Linnaeus (Diptera: Culicidae) from Bhutan. Acta Tropica, 217, 105868.
Sona, A., & Değer, S. (2015). Van Gölü Havzasındaki Sivrisinek (Diptera: Culicidae) Türleri ve Aktiviteleri Üzerine Araştırmalar. Van Veterinary Journal, 27(2), 53-56.
Şakacı, Z. (2021). Contribution to mosquito (Diptera: Culicidae) fauna of Sakarya province and the first record of the invasive vector Aedes albopictus (Skuse, 1894) for Kocaeli province. Balıkesir Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 23(1), 10-21.
Theobald, FV. (1901). A Monograph of the Culicidae, or Mosquitoes. Volume I. London: British Museum (Natural History).
Versteirt, V., Nagy, Z. T., Roelants, P., Denis, L., Breman, F. C., Damiens, D., Dekoninck, W., Backeljau, T., Coosemans, M., & Van Bortel, W. (2015). Identification of Belgian mosquito species (Diptera: Culicidae) by DNA barcoding. Molecular Ecology Resources, 15(2), 449-457. https://doi.org/10.1111/1755-0998.12318
Walton, C., Sharpe, R. G., Pritchard, S. J., Thelwell, N. J., & Butlin, R. K. (1999). Molecular identification of mosquito species. Biological Journal of the Linnean Society, 68(1-2), 241-256.
Yang, F., Ding, F., Chen, H., He, M., Zhu, S., Ma, X., ... & Li, H. (2018). DNA barcoding for the identification and authentication of animal species in traditional medicine. Evidence‐Based Complementary and Alternative Medicine, 2018(1), 5160254.
Yatkın, G., & Güz, N. (2018). Entomolojide DNA Barkodlama Tekniğinin Kullanımı. Yuzuncu Yıl University Journal of Agricultural Sciences, 28(1), 126-134.
Yeates, D. K., & Wiegmann, B. M. (1999). Congruence and Controversy: Toward a Higher-Level Phylogeny of Diptera. Annual Review of Entomology, 44(1), 397-428. https://doi.org/10.1146/annurev.ento.44.1.397
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