An Investigation of Polymorphism on the FASN, SCD1, and SLC27A3 Genes in Sheep

Authors

DOI:

https://doi.org/10.24925/turjaf.v12i10.1812-1816.7047

Keywords:

cross-bred Hamdani sheep, gene polymorphism, PCR-RFLP, milk, Production

Abstract

Milk traits of sheep are affected by many environmental and genetic factors. These traits are quantitative traits and are determined by many genes. This study aimed to investigate polymorphisms of milk-related Fatty-acid synthase (FASN), Stearoyl-CoA desaturase (SCD1), and solute carrier 27A3 (SLC27A3) genes in cross-bred Hamdani sheep. Blood samples were collected from 100 healthy cross-bred Hamdani ewes from the jugular vein into K3-EDTA-containing tubes. Genomic DNA was extracted using a commercial DNA isolation kit. PCR products of FASN (275 bp), SCD1 (225 bp), SLC27A3-P1 (341 bp), and SLC27A3-P2 (319 bp) were subjected to restriction fragment length polymorphism (RFLP) analysis using SSil (AciI), Cfr13I, AluI, and Hpy188III the restriction enzyme, respectively. However, all gene regions were found to be monomorphic. In the study, only TT, AA, AA, and GG genotypes were detected for FASN, SCD1, SLC27A3-P1, and SLC27A3-P2, respectively. Allele and genotype frequencies were 1.00 for all genotypes and alleles. Although this study did not reveal favorable genotypes in FASN, SCD1, and SLC27A3 genes that can be used for milk traits, more comprehensive studies with larger sample sizes should be conducted to investigate polymorphisms in cross-bred Hamdani sheep.

References

Abd Allah, M., Abass, S. F., & Allam, F. M. (2011). Factors affecting the milk yield and composition of Rahmani and Chios sheep. International Journal of Livestock Production, 2(3), 24-30.

Anderson, S. M., Rudolph, M. C., McManaman, J. L., & Neville, M. C. (2007). Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis! Breast Cancer Research, 9, 1-14. https://doi.org/10.1186/bcr1653

Bakır, G., & Mikail, N. (2019). Siirt ilindeki küçükbaş hayvancılık işletmelerinin yapısal durumu. Atatürk Üniversitesi Ziraat Fakültesi Dergisi, 50(1), 66-74. https://doi.org/10.17097/ataunizfd.411087

Bayraktar, M., & Shoshin, O. (2021). Determination effects of SLC27A3 and β-Lactoglobulin gene polymorphisms on the milk composition in Hamdani sheep. Applied Ecology and Environmental Research, 19(4), 3293-3302. http://dx.doi.org/10.15666/aeer/1904_32933302

Bernard, L., Leroux, C., Hayes, H., Gautier, M., Chilliard, Y., & Martin, P. (2001). Characterization of the caprine stearoyl-CoA desaturase gene and its mRNA showing an unusually long 3′-UTR sequence arising from a single exon. Gene, 281(1-2), 53-61. https://doi.org/10.1016/S0378-1119(01)00822-8

Calvo, J. H., Martínez‐Royo, A., Beattie, A. E., Dodds, K. G., Marcos‐Carcavilla, A., & Serrano, M. (2006). Fine mapping of genes on sheep chromosome 1 and their association with milk traits. Animal genetics, 37(3), 205-210. https://doi.org/10.1111/j.1365-2052.2006.01412.x

Corl, B. A., Baumgard, L. H., Dwyer, D. A., Griinari, J. M., Phillips, B. S., & Bauman, D. E. (2001). The role of Δ9-desaturase in the production of cis-9, trans-11 CLA. The Journal of Nutritional Biochemistry, 12(11), 622-630. https://doi.org/10.1016/S0955-2863(01)00180-2

Crisà, A., Marchitelli, C., Pariset, L., Contarini, G., Signorelli, F., Napolitano, F., Catillo, G., Valentini, A., & Moioli, B. (2010). Exploring polymorphisms and effects of candidate genes on milk fat quality in dairy sheep. Journal of dairy science, 93(8), 3834-3845. https://doi.org/10.3168/jds.2009-3014

Czerniawska-Piątkowska, E., Kowalewska-Łuczak, I., Pecka-Kiełb, E., & Banaszewska, D. (2021). Effects of FASN and SCD gene polymorphism on the composition of sheep's milk. JAPS: Journal of Animal & Plant Sciences, 31(3). https://doi.org/10.36899/JAPS.2021.3.0280

Doege, H., & Stahl, A. (2006). Protein-mediated fatty acid uptake: novel insights from in vivo models. Physiology, 21(4), 259-268. https://doi.org/10.1152/physiol.00014.2006

García‐Fernández, M., Gutiérrez‐Gil, B., García‐Gámez, E., Sánchez, J. P., & Arranz, J. J. (2010a). The identification of QTL that affect the fatty acid composition of milk on sheep chromosome 11. Animal Genetics, 41(3), 324-328. https://doi.org/10.1111/j.1365-2052.2009.02000.x

García-Fernández, M., Gutiérrez-Gil, B., García-Gámez, E., Sánchez, J. P., & Arranz, J. J. (2010b). Detection of quantitative trait loci affecting the milk fatty acid profile on sheep chromosome 22: role of the stearoyl-CoA desaturase gene in Spanish Churra sheep. Journal of dairy science, 93(1), 348-357. https://doi.org/10.3168/jds.2009-2490

Houten, S. M., & Wanders, R. J. (2010). A general introduction to the biochemistry of mitochondrial fatty acid β-oxidation. Journal of Inherited Metabolic Disease, 33, 469-477. https://doi.org/10.1007/s10545-010-9061-2

Koca, D., Çelik, B. A., Çelik, Ö. Y., Ayan, A., Kılınç, Ö. O., Turgut, A. O., & Ayan, Ö. O. (2023b). Molecular Survey of the Toxoplasma gondii and Neospora caninum in brain tissue of aborted fetuses of Morkaraman sheep in Muş, Türkiye. Turkish Journal of Agriculture-Food Science and Technology, 11(12), 2407-2410. https://orcid.org/0000-0003-2577-3774

Koca, D., Turgut, A. O., Çetin, N., Üner, S., Gülendağ, E., & Karagülle, B. (2023a). Chemical composition and physical properties of milk in Norduz sheep. Van Veterinary Journal, 34(3), 271-274. https://doi.org/10.36483/vanvetj.1353378

Koca, D., Nak, Y., Sendag, S., Nak, D., Turgut, A. O., Avcılar, T. Ekinci, Z.M., Çetin, N., Bağci, K., Aktar, A., Sağırkaya, H., Alçay, S. & Wehrend, A. (2024). Anti‐Müllerian hormone: A novel biomarker for detecting bovine freemartinism. Reproduction in Domestic Animals, 59(2), e14542. https://doi.org/10.1111/rda.14542

Kowalewska-Łuczak, I., Czerniawska-Piątkowska, E., & Pecka-Kiełb, E. (2017). Investigation on relationships of the FABP3 AND SLC27A3 genes with milk production traits in sheep. Journal of Elementology, 22(4). https://doi.org/10.5601/jelem.2017.22.1.1406

Kulig, H., Kowalewska-Łuczak, I., Kmieć, M., & Wojdak-Maksymiec, K. (2010). ANXA9, SLC27A3, FABP3 and FABP4 single nucleotide polymorphisms in relation to milk production traits in Jersey cows. Czech Journal of Animal Science, 55(11), 463-467. https://doi.org/10.17221/1714-CJAS

Matar, A. M., Al-Garadi, M. A., Aljummah, R. S., Abid, I., & Ayadi, M. (2023). Identification of genetic polymorphisms in the stearoyl CoA desaturase gene and its association with milk quality traits in Najdi sheep. Open Chemistry, 21(1), 20230118. https://doi.org/10.1515/chem-2023-0118

Miari, S., Graziano Usai, M., Sechi, T., Pernisa, A., & Carta, A. (2009). One polymorphism at the Stearoyl CoA Desaturase (SCD) gene is associated to CLA content of sheep milk fat. Italian Journal of Animal Science, 8(sup2), 108-110. https://doi.org/10.4081/ijas.2009.s2.108

Naeemah, A. G., & Al-Anbari, N. N. (2023). Relationship between SCD1 Gene Polymorphism and the Production and Composition of Milk in the Iraqi Awassi Sheep. Archives of Razi Institute, 78(1), 45-52. https://doi.org/10.22092/ari.2022.358338.2200

Ocak, E., Bingol, M., & Gökdal, Ö. (2009). Van yöresinde yetiştirilen Norduz koyunlarının süt bileşimi ve süt verim özellikleri. Yüzüncü Yıl Üniversitesi Ziraat Fakültesi Tarım Bilimleri Dergisi, 19: 85-89.

Pecka-Kiełb, E., Kowalewska-Łuczak, I., Czerniawska-Piątkowska, E., & Zielak-Steciwko, A. E. (2020). Effects of single nucleotide polymorphisms in the SLC27A3 gene on the nutritional value of sheep milk. Animals, 10(4), 562. https://doi.org/10.3390/ani10040562

Pecka-Kiełb, E., Kowalewska-Łuczak, I., Czerniawska-Piątkowska, E., & Króliczewska, B. (2021). FASN, SCD1 and ANXA9 gene polymorphism as genetic predictors of the fatty acid profile of sheep milk. Scientific Reports, 11(1), 23761. https://doi.org/10.1038/s41598-021-03186-y

Sztankoova, Z., Rychtarova, J., Borkova, M., Svitakova, A., & Milerski, M. (2018). Polymorphism and association of the FASN gene with milk production traits in Czech sheep population. Journal of Hygienic Engineering and Design. 84-89.

Symeou, S., Tzamaloukas, O., Banos, G., & Miltiadou, D. (2020). ACAA2 and FASN polymorphisms affect the fatty acid profile of Chios sheep milk. Journal of Dairy Research, 87(1), 23-26. https://doi.org/10.1017/S0022029919000992

Turgut, A. O., & Koca, D. (2024b). Anti‐Müllerian hormone as a promising novel biomarker for litter size in Romanov sheep. Reproduction in Domestic Animals, 59(8), e14692. https://doi.org/10.1111/rda.14692

Turgut, A. O., & Koca, D. (2024a). Serum Anti-Müllerian Hormone Levels during Estrus and Diestrus Phases of the Estrous Cycle and its Possible Effect on Fertility in Cross-bred Hamdani Sheep. Pakistan Veterinary Journal, 44(1). ect on fertility in cross-bred hamdani sheep. http://dx.doi.org/10.29261/pakvetj/2024.134

Turgut, A. O., Gülendağ, E., Koca, D., & Üner, S. (2024). PAEP gene restriction fragment length polymorphism and its effects on milk composition in cross-bred Hamdani sheep. Journal of Advances in VetBio Science and Techniques, 9(1), 35-41. https://doi.org/10.31797/vetbio.1402523

Turgut, A.O., Gülendağ, E., Koca, D., & Üner, S. (2023). Milk composition traits of hamdani crossbreed sheep raised under extensive management. ISPEC Journal of Agricultural Sciences, 7(2), 271-279. https://doi.org/10.5281/zenodo.8020354

Downloads

Published

15.10.2024

How to Cite

Turgut, A. O., Gülendağ, E., Küçük, M., Koca, D., Ayan, A., Eroğlu, M., & Önen, M. F. (2024). An Investigation of Polymorphism on the FASN, SCD1, and SLC27A3 Genes in Sheep. Turkish Journal of Agriculture - Food Science and Technology, 12(10), 1812–1816. https://doi.org/10.24925/turjaf.v12i10.1812-1816.7047

Issue

Section

Research Paper